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When you create a form export you have the option to include data that was captured in repeat groups. These are in a separate section of the export setup page., and you need to click on the checkbox to include this data in your export: 

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After downloading the export you will see that the data for each type of repeat group is stored on a separate tab in your Excel file. A special column called row.number is used to link the repeat data with the main form submission. 

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